PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G135452_P01
Common NameLOC100285966
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 173aa    MW: 18802.2 Da    PI: 6.9591
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G135452_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-19756255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  GRMZM2G135452_P01  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 56
                       69******9.**********8.....334**********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.38E-30666No hitNo description
PfamPF008472.6E-11755IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-33765IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-20765IPR016177DNA-binding domain
SMARTSM003803.0E-37770IPR001471AP2/ERF domain
PROSITE profilePS5103220.692764IPR001471AP2/ERF domain
PRINTSPR003672.7E-11819IPR001471AP2/ERF domain
PRINTSPR003672.7E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARIMCGPRVR  60
TNFPEDAAAD GQGQPAATAL LSPALVAKLH RFNLASVQAA RGRADDSAAA AASAPAVLAR  120
IAPMPASNAS MRIAPLTSAA VAAGHWSGDF LEEQYVDQMI EELLDSNFSV EIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-16664463ATERF1
2gcc_A3e-16664463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.320920.0endosperm| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G135452
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G135452_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749420.0EU974942.1 Zea mays clone 461426 ethylene response factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152327.11e-123ethylene response factor 1
SwissprotQ94AW57e-50ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A096S8S81e-123A0A096S8S8_MAIZE; Uncharacterized protein
STRINGGRMZM2G135452_P011e-123(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-36ERF family protein